Eugene K. Koonin: search on Z-Library

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1

Origin and Evolution of the Universal Genetic Code

Koonin, Eugene V., Novozhilov, Artem S.

Journal:

Annual Review of Genetics

Year:

2017

Language:

english

File:

PDF, 745 KB

english, 2017

2

Classification and Nomenclature of CRISPR-Cas Systems: Where from Here?

Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.

Journal:

The CRISPR Journal

Year:

2018

Language:

english

File:

PDF, 4.36 MB

english, 2018

3

Diversity, classification and evolution of CRISPR-Cas systems

Koonin, Eugene V, Makarova, Kira S, Zhang, Feng

Journal:

Current Opinion in Microbiology

Year:

2017

Language:

english

File:

PDF, 1.96 MB

english, 2017

4

Lamarckian or not, CRISPR-Cas is an elaborate engine of directed evolution

Koonin, Eugene V.

Journal:

Biology & Philosophy

Year:

2019

Language:

english

File:

PDF, 601 KB

english, 2019

5

Origin and evolution of the genetic code: The universal enigma

Eugene V. Koonin, Artem S. Novozhilov

Journal:

Year:

2009

Language:

english

File:

PDF, 304 KB

english, 2009

6

Classification and quantification of bacteriophage taxa in human gut metagenomes

Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

7

The enigmatic archaeal virosphere

Prangishvili, David, Bamford, Dennis H., Forterre, Patrick, Iranzo, Jaime, Koonin, Eugene V., Krupovic, Mart

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 7.66 MB

english, 2017

8

The virophage as a unique parasite of the giant mimivirus

La Scola, Bernard, Desnues, Christelle, Pagnier, Isabelle, Robert, Catherine, Barrassi, Lina, Fournous, Ghislain, Merchat, Michèle, Suzan-Monti, Marie, Forterre, Patrick, Koonin, Eugene

Journal:

Year:

2008

Language:

english

File:

PDF, 663 KB

english, 2008

9

On the origin of genomes and cells within inorganic compartments

Eugene V. Koonin, William Martin

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 534 KB

english, 2005

10

Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes

Makarova, Kira S., Wolf, Yuri I., Forterre, Patrick, Prangishvili, David, Krupovic, Mart, Koonin, Eugene V.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.28 MB

english, 2014

11

Viruses of archaea: Structural, functional, environmental and evolutionary genomics

Krupovic, Mart, Cvirkaite-Krupovic, Virginija, Iranzo, Jaime, Prangishvili, David, Koonin, Eugene V.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.61 MB

english, 2018

12

Physical foundations of biological complexity

Wolf, Yuri I., Katsnelson, Mikhail I., Koonin, Eugene V.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 843 KB

english, 2018

13

Predator Dormancy is a Stable Adaptive Strategy due to Parrondo's Paradox

Tan, Zhi‐Xuan, Koh, Jin Ming, Koonin, Eugene V., Cheong, Kang Hao

Journal:

Advanced Science

Year:

2019

Language:

english

File:

PDF, 1.86 MB

english, 2019

14

How stands the Tree of Life a century and a half afterThe Origin?

Maureen A O’Malley, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 520 KB

english, 2011

15

The common ancestry of life

Eugene V Koonin, Yuri I Wolf

Journal:

Year:

2010

Language:

english

File:

PDF, 397 KB

english, 2010

16

ORTHOLOGS, PARALOGS, AND EVOLUTIONARY GENOMICS1

Koonin, Eugene V.

Journal:

Annual Review of Genetics

Year:

2005

Language:

english

File:

PDF, 758 KB

english, 2005

17

The Origin at 150: is a new evolutionary synthesis in sight?

Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2009

Language:

english

File:

PDF, 123 KB

english, 2009

18

Classification and evolution of P-loop GTPases and related ATPases

Detlef D Leipe, Yuri I Wolf, Eugene V Koonin, L Aravind

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 1.61 MB

english, 2002

19

The cosmological model of eternal inflation and the transition from chance to biological evolution in the history of life

Eugene V Koonin

Journal:

Year:

2007

Language:

english

File:

PDF, 374 KB

english, 2007

20

Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies

Natalya Yutin, Didier Raoult, Eugene V Koonin

Journal:

Virology Journal

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

21

Genome reduction as the dominant mode of evolution

Wolf, Yuri I., Koonin, Eugene V.

Journal:

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

22

Carl Woese's vision of cellular evolution and the domains of life

Koonin, Eugene V

Journal:

Year:

2014

Language:

english

File:

PDF, 946 KB

english, 2014

23

A new family of hybrid virophages from an animal gut metagenome

Yutin, Natalya, Kapitonov, Vladimir V, Koonin, Eugene V

Journal:

Year:

2015

Language:

english

File:

PDF, 510 KB

english, 2015

24

Polintons, virophages and transpovirons: a tangled web linking viruses, transposons and immunity

Koonin, Eugene V, Krupovic, Mart

Journal:

Current Opinion in Virology

Year:

2017

Language:

english

File:

PDF, 499 KB

english, 2017

25

Towards physical principles of biological evolution

Katsnelson, Mikhail I, Wolf, Yuri I, Koonin, Eugene V

Journal:

Physica Scripta

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

26

Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code

Journal:

Year:

2017

Language:

english

File:

PDF, 1005 KB

english, 2017

27

Microbial genomics challenge Darwin

Raoult, Didier, Koonin, Eugene V.

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2012

Language:

english

File:

PDF, 405 KB

english, 2012

28

The depths of virus exaptation

Koonin, Eugene V, Krupovic, Mart

Journal:

Current Opinion in Virology

Year:

2018

Language:

english

File:

PDF, 458 KB

english, 2018

29

[Advances in Virus Research] || Evolution of the Large Nucleocytoplasmic DNA Viruses of Eukaryotes and Convergent Origins of Viral Gigantism

Koonin, Eugene V.

Year:

2018

Language:

english

File:

PDF, 948 KB

english, 2018

30

Classify viruses — the gain is worth the pain

Kuhn, Jens H., Wolf, Yuri I., Krupovic, Mart, Zhang, Yong-Zhen, Maes, Piet, Dolja, Valerian V., Koonin, Eugene V.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.28 MB

english, 2019

31

Deep Roots and Splendid Boughs of the Global Plant Virome

Dolja, Valerian V., Krupovic, Mart, Koonin, Eugene V.

Journal:

Annual Review of Phytopathology

Year:

2020

File:

PDF, 4.71 MB

2020

32

The LUCA and its complex virome

Krupovic, Mart, Dolja, Valerian V., Koonin, Eugene V.

Journal:

Nature Reviews Microbiology

Year:

2020

File:

PDF, 1.65 MB

2020

33

Scale-free networks in biology: new insights into the fundamentals of evolution?

Yuri I. Wolf, Georgy Karev, Eugene V. Koonin

Journal:

Year:

2002

Language:

english

File:

PDF, 96 KB

english, 2002

34

Planctomycetes and eukaryotes: A case of analogy not homology

James O. McInerney, William F. Martin, Eugene V. Koonin, John F. Allen, Michael Y. Galperin, Nick Lane, John M. Archibald, T. Martin Embley

Journal:

Year:

2011

Language:

english

File:

PDF, 115 KB

english, 2011

35

Sequence analysis of an exceptionally conserved operon suggests enzymes for a new link between histidine and purine biosynthesis

Michael Y. Galperin, Eugene V. Koonin

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 661 KB

english, 1997

36

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

Eugene V. Koonin, Arcady R. Mushegian, Michael Y. Galperin, D. Roland Walker

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 1.22 MB

english, 1997

37

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

Kira S Makarova, L Aravind, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2011

Language:

english

File:

PDF, 2.97 MB

english, 2011

38

Two domains of superfamily I helicases may exist as separate proteins

Eugene V. Koonin, Kenneth E. Rudd

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 1.58 MB

english, 1996

39

On the Origin of Cells and Viruses : Primordial Virus World Scenario

Eugene V. Koonin

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 408 KB

english, 2009

40

Apoptosis: Searching for FLASH domains

Koonin, Eugene V., Aravind, L., Hofmann, Kay, Tschopp, Jurg, Dixit, Vishva M.

Journal:

Year:

1999

Language:

english

File:

PDF, 122 KB

english, 1999

41

Introns and the origin of nucleus–cytosol compartmentalization

Martin, William, Koonin, Eugene V.

Journal:

Year:

2006

Language:

english

File:

PDF, 235 KB

english, 2006

42

Comparative genomics, minimal gene-sets and the last universal common ancestor

Koonin, Eugene V.

Journal:

Nature Reviews Microbiology

Year:

2003

Language:

english

File:

PDF, 299 KB

english, 2003

43

The ancient Virus World and evolution of cells

Eugene V Koonin, Tatiana G Senkevich, Valerian V Dolja

Journal:

Year:

2006

Language:

english

File:

PDF, 2.02 MB

english, 2006

44

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Kira S Makarova, Nick V Grishin, Svetlana A Shabalina, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2006

Language:

english

File:

PDF, 884 KB

english, 2006

45

Genome Structure and Phylogenetic Analysis of Lettuce Infectious Yellows Virus, a Whitefly-Transmitted, Bipartite Closterovirus

Vicki A. Klaassen, Maury L. Boeshore, Eugene V. Koonin, Tongyan Tian, Bryce W. Falk

Journal:

Year:

1995

File:

PDF, 715 KB

1995

46

The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase

Han-Jung Lee, Chien-Kou Shieh, Alexander E. Gorbalenya, Eugene V. Koonin, Nicola La Monica, Jeremy Tuler, Anush Bagdzhadzhyan, Michael M.C. Lai

Journal:

Year:

1991

Language:

english

File:

PDF, 1.61 MB

english, 1991

47

Genome trees and the tree of life

Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

2002

Language:

english

File:

PDF, 64 KB

english, 2002

48

Rickettsiae and Chlamydiae: evidence of horizontal gene transfer and gene exchange

Yuri I. Wolf, L. Aravind, Eugene V. Koonin

Journal:

Trends in Genetics

Year:

1999

Language:

english

File:

PDF, 117 KB

english, 1999

49

A duplicated catalytic motif in a new superfamily of phosphohydrolases and phospholipid synthases that includes poxvirus envelope proteins

Eugene V. Koonin

Journal:

Trends in Biochemical Sciences

Year:

1996

Language:

english

File:

PDF, 287 KB

english, 1996

50

Evolution ofAANAT: expansion of the gene family in the cephalochordate amphioxus

Jiri Pavlicek, Sandrine Sauzet, Laurence Besseau, Steven L Coon, Joan L Weller, Gilles Boeuf, Pascaline Gaildrat, Marina V Omelchenko, Eugene V Koonin, Jack Falcón, David C Klein

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 4.45 MB

english, 2010